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What do you mean with "mypatchbay doesn't get loaded nor activated" ? From the messages above from your report (active patchbay scan...) you can be sure that some patchbay is loaded and activated, otherwise those messages wouldn't never get out.

Please, after starting qjackctl like you want, verify that Setup\Options\Connections\Active patchbay persistence option is checked and whether it is the correct file path (nb. you probably wish to specify a complete absolute path on the command line, otherwise it all can vary on the current working directory where qjackctl is launched next time).

Cheers